Publication Highlights From CRI Collaborative Teams

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The Cancer Research Institute had an outstanding year in publications. All the collaborative teams worked hard to have many papers published. Below is a list of all the publications and their respective links.


Bogi Andersen & Max Plikus

A Roadmap for a Consensus Human Skin Cell Atlas and Single-Cell Data Standardization.

J Invest Dermatol

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Angela Fleischman & Katrine Whiteson

Characterizing the microbiome of patients with myeloproliferative neoplasms during a Mediterranean diet intervention.

mBio

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Mei Kong & Lauren Albrecht

Vitamin B6 is governed by the local compartmentalization of metabolic enzymes during growth.

Science Advances

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Marcus Seldin & Dequina Nicholas

Lipopolysaccharide-induced chronic inflammation increases female serum gonadotropins and shifts the pituitary transcriptomic landscape.

Front Endocrinol (Lausanne)

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Thomas Martinez & Cholsoon Jang

The landscape of fetus metabolism in maternal hyperglycemia.

Trends Endocrinol Metab

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Wenqi Wang & Max Plikus

Delayed Collagen Production without Myofibroblast Formation Contributes to Reduced Scarring in Adult Skin Microwounds.

J Invest Dermatol.

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Alexandre Chan, Angela Fleischman & Nick Pannunzio

HyperCVAD versus pegaspargase-containing regimens for Hispanic adults with newly diagnosed B-cell acute lymphoblastic leukemia.

Eur J Haematol

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Clare Yu, Lan Huang & Xiaoyu Shi

Proximity Labeling Expansion Microscopy (PL-ExM) resolves structure of the interactome.

 bioRxiv

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Armando Villalta & Xiaolin Zi

Dysfunction of the aging female mouse urethra is associated with striated muscle loss and increased fibrosis: an initial report.

Am J Clin Exp Urol.

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Scott Atwood & Arthur Lander

Leveraging gene correlations in single cell transcriptomic data.

bioRxiv [Preprint]

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Xiaoyu Shi & Max Plikus

Excessive nucleic acid R-loops induce mitochondria-dependent epithelial cell necroptosis and drive spontaneous intestinal inflammation.

Proc Natl Acad Sci U S A.

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Cholsoon Jang, Nick Pannunzio, Dequina Nicholas, Selma Masri & Marcu Seldin

Leveraging inter-individual transcriptional correlation structure to infer discrete signaling mechanisms across metabolic tissues.

Elife

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Alexandre Chan

Neuropsychiatric complications and associated management in adolescent and young adult cancer survivors: An All of Us study.

Cancer Med

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Lauren Albrecht

All the might of the osteocyte: emerging roles in chronic kidney disease.

Kidney Int

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Alexandre Chan

Prediction of gastrointestinal symptoms trajectories using omega-3 and inflammatory biomarkers in early-stage breast cancer patients receiving chemotherapy.

Support Care Cancer

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Dongbao Chen

ICI 182,780 Attenuates Selective Upregulation of Uterine Artery Cystathionine β-Synthase Expression in Rat Pregnancy.

Int J Mol Sci

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Bruce Blumberg

Heritable changes in chromatin contacts linked to transgenerational obesity.

Res Sq [Preprint]

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Arthur Lander

The inherent fragility of collective proliferative control.

bioRxiv [Preprint]

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Lauren Albrecht

Hitting the Sweet Spot: How Glucose Metabolism Is Orchestrated in Space and Time by Phosphofructokinase-1.

Cancers (Basel)

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Thomas Martinez

Integrated workflow for discovery of microprotein-coding small open reading frames.

STAR Protoc

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Claudia Benavente

Exploring the Impact of Exosomal Cargos on Osteosarcoma Progression: Insights into Therapeutic Potential.

 Int J Mol Sci

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Marcus Seldin

CTRP13 ablation improves systemic glucose and lipid metabolism.

Mol Metab

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Thomas Burke

Cytosolic bacterial pathogens activate TLR pathways in tumors that synergistically enhance STING agonist cancer therapies.

bioRxiv

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Charles Limoli

Complex 33-beam simulated galactic cosmic radiation exposure impacts cognitive function and prefrontal cortex neurotransmitter networks in male mice.

Nat Commun

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Lan Huang

DSBSO-Based XL-MS Analysis of Breast Cancer PDX Tissues to Delineate Protein Interaction Network in Clinical Samples.

J Proteome Res

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David Fruman

Statin-induced Mitochondrial Priming Sensitizes Multiple Myeloma Cells to BCL2 and MCL-1 Inhibitors.

Cancer Res Commun.

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Selma Masri

Circadian Clock Dysregulation and Prostate Cancer: A Molecular and Clinical Overview.

Clin Med Insights Oncol

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Lauren Albrecht

Sclerostin, Osteocytes, and Wnt Signaling in Pediatric Renal Osteodystrophy.

Nutrients

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Wei Li

Immune-response 3’UTR alternative polyadenylation quantitative trait loci contribute to variation in human complex traits and diseases.

Nat Commun

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Charles Limoli

The sparing effect of FLASH-RT on synaptic plasticity is maintained in mice with standard fractionation.

Radiother Oncol

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Scott Atwood

Applying Multiomics to Basosquamous Carcinoma.

J Invest Dermatol

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Jennifer Prescher

Caged luciferins enable rapid multicomponent bioluminescence imaging.

Photochem Photobiol

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Darci Trader

Discovery and Development of Cyclic Peptide Proteasome Stimulators.

Chembiochem

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Xiaolin Zi

ATPase copper transporting beta (ATP7B) is a novel target for improving the therapeutic efficacy of docetaxel by disulfiram/copper in human prostate cancer.

Mol Cancer Ther.

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Michael Demetriou

N-acetylglucosamine inhibits inflammation and neurodegeneration markers in multiple sclerosis: a mechanistic trial.

 J Neuroinflammation

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Jennifer Prescher

Recent advances in bioluminescent probes for neurobiology.

Neurophotonics

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Lisa Wagar

Human immune organoids: a tool to study vaccine responses.

Nat Rev Immunol

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Aimee Edinger

Diversifying faculty recruitment in biomedical sciences.

FASEB Journal

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Xiaoyu Shi

Label-Retention Expansion Microscopy (LR-ExM) for Enhanced Fluorescent Signals using Trifunctional Probes.

Current Protocols

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Robert Edwards, S. Armando Villalta, & Devon Lawson

Microglia promote anti-tumour immunity and suppress breast cancer brain metastasis

Nat Cell Biol.

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Kai Kessenbrock & Chris Hughes

Targeting tumor-stromal interactions in triple-negative breast cancer using a human vascularized micro-tumor model

Breast Cancer Research

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Ivan Marazzi, Wei Li, & Yongsheng Shi

The anticancer compound JTE-607 reveals hidden sequence specificity of the mRNA 3′ processing machinery.

Nature Structural & Molecular Biology

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Katrine Whiteson & Angela Fleischman

The NUTRIENT Trial (NUTRitional Intervention among myEloproliferative Neoplasms): Results from a Randomized Phase I Pilot Study for Feasibility and Adherence.

Cancer Research Communications

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Mei Kong & Sha Sun

An emerging link between lncRNAs and cancer sex dimorphism

Human Genetics

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Rémi Buisson & Roberto Tinoco

HMGB2 regulates the differentiation and stemness of exhausted CD8+ T cells during chronic viral infection and cancer.

Nature Communications

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Marcus Seldin, Rémi Buisson, & Peter Kaiser

Induction of resistance to oxaliplatin in cancer by a microRNA/Fem1B/Gli1 pathway

American Journal of Cancer Research

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Armando Villalta, Kai Kessenbrock, Cholsoon Jang, Marcus Seldin, Yongsheng Shi, & Ivan Marazzi

Nuclear RNA catabolism controls endogenous retroviruses, gene expression asymmetry, and dedifferentiation

Molecular Cell

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Craig Walsh & Matthew Inlay

Graft conditioning with fluticasone propionate reduces graft-versus-host disease upon allogeneic hematopoietic cell transplantation in mice.

EMBO Molecular Medicine

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